[ FreeCourseWeb ] Udemy - NCBI tools in Linux
- CategoryOther
- TypeTutorials
- LanguageEnglish
- Total size1 GB
- Uploaded Byfreecoursewb
- Downloads38
- Last checkedJul. 24th '21
- Date uploadedJul. 21st '21
- Seeders 8
- Leechers2
NCBI tools in Linux
MP4 | Video: h264, 1280x720 | Audio: AAC, 44.1 KHz, 2 Ch
Genre: eLearning | Language: English + srt | Duration: 15 lectures (1h 57m) | Size: 881.2 MB
how to run several NCBI tools in the Linux environment
What you'll learn:
Students will learn how to use tools at the NCBI database in Linux
NCBI blast tools
Clustalw
SRA tools
some Biopython
primer3
GeoR
Requirements
basic knowledge of Linux programming and molecular biology
Description
Bioinformatics has become an entirely independent discipline. This branch of science can greatly speed up and facilitate biological and biomedical research. As a biology or medical student or researcher you might be using bioinformatics tools at NCBI. You might also be interested in learning how to use these programs in Linux to make your work more efficient by automating them. This course helps you do exactly this.
In this course we will learn how to use the Linux version of several NCBI tools, such as ClustalW, bl2seq, analyzing GEO data sets, primer design by primer3, or downloading sequences using a Biopython script. We will also learn how to format BLAST databases and run Blast queries against them. We will also learn about the SRA database and how to download SRA NextGen fastq data sets.
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Files:
[ FreeCourseWeb.com ] Udemy - NCBI tools in Linux- Get Bonus Downloads Here.url (0.2 KB) ~Get Your Files Here ! 01 Linux basics
- 001 Introduction.en.srt (4.0 KB)
- 001 Introduction.mp4 (12.9 MB)
- 001 Biopython.en.srt (4.2 KB)
- 001 Biopython.mp4 (16.7 MB)
- 002 The downloadNCBI.py script.en.srt (14.0 KB)
- 002 The downloadNCBI.py script.mp4 (131.7 MB)
- 003 Running the Biopython download script.en.srt (5.4 KB)
- 003 Running the Biopython download script.mp4 (64.5 MB)
- 003 downloadNCBI.py (3.0 KB)
- 001 Multiple alignment softwares.en.srt (9.9 KB)
- 001 Multiple alignment softwares.mp4 (48.3 MB)
- 002 ClustalW_ download, install, use.en.srt (5.2 KB)
- 002 ClustalW_ download, install, use.mp4 (76.1 MB)
- 003 Clustal and Fasta alignment with MAFFT.en.srt (6.5 KB)
- 003 Clustal and Fasta alignment with MAFFT.mp4 (82.1 MB)
- 004 Bl2seq - aligning only two sequences.en.srt (5.8 KB)
- 004 Bl2seq - aligning only two sequences.mp4 (56.3 MB)
- 008 bl2seq (4.5 MB)
- 001 BLAST_ theory.en.srt (12.6 KB)
- 001 BLAST_ theory.mp4 (39.0 MB)
- 002 Download BLAST software suite, P. gingivalis genomes and generate DB.en.srt (7.8 KB)
- 002 Download BLAST software suite, P. gingivalis genomes and generate DB.mp4 (137.5 MB)
- 003 Running NCBI BLAST.en.srt (6.2 KB)
- 003 Running NCBI BLAST.mp4 (71.4 MB)
- 009 spacer_sequence.txt (0.8 KB)
- 001 SRA tools.en.srt (6.3 KB)
- 001 SRA tools.mp4 (34.1 MB)
- 002 fastq-dump and sam-dump practical.en.srt (12.4 KB)
- 002 fastq-dump and sam-dump practical.mp4 (143.7 MB)
- 001 Introduction to primer3, download, installation, configuration.en.srt (11.4 KB)
- 001 Introduction to primer3, download, installation, configuration.mp4 (45.4 MB)
- 002 Design primers for Spike protein of SARS-CoV-2.en.srt (8.7 KB)
- 002 Design primers for Spike protein of SARS-CoV-2.mp4 (97.0 MB)
- 014 Untergasser_2012_NAR_primer3.pdf (7.4 MB)
- Bonus Resources.txt (0.3 KB)
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